PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000501042
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 51aa    MW: 5805.7 Da    PI: 10.3344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000501042genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.1e-062244123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  n++ H r H
  MDP0000501042 22 FVCEICSKGFQRDQNFHLHRRGH 44
                   89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-52044IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.92E-62045No hitNo description
PfamPF121711.3E-52144IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.0762244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
MPDPDAKVIA LSSKTRLATN QFVCEICSKG FQRDQNFHLH RRGHNLPWKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560587.14e-25PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ74e-26IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A068VQ135e-25A0A068VQ13_COFCA; Uncharacterized protein
TrEMBLD9ZIU56e-25D9ZIU5_MALDO; C2H2L domain class transcription factor
TrEMBLM8A6K54e-25M8A6K5_TRIUA; Uncharacterized protein
STRINGVIT_04s0023g01430.t015e-24(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-27C2H2-like zinc finger protein